PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400056813
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 434aa    MW: 49335.2 Da    PI: 5.6947
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400056813genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like54.82e-1782134455
               G2-like   4 lrWtpeLHerFveaveqLGGsekAtPktilelmk..vkgLtlehvkSHLQkYRl 55 
                           ++Wt++LH++Fv+ v+qL G+ +  Pk+ile+mk  v++Lt+ +v+S LQk R 
  PGSC0003DMP400056813  82 REWTNDLHAKFVKTVQQL-GEGRCYPKEILEVMKhdVPDLTRMQVASYLQKCRR 134
                           68****************.9*************64478*************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.03373137IPR017930Myb domain
SuperFamilySSF466892.33E-1277134IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-1779135IPR009057Homeodomain-like
TIGRFAMsTIGR015579.6E-1582135IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MNGDDIGKID IVGENVEQSG EKKNVANVEE QKNNTDEVET DVESNEKYKL RRKRGRKNTK  60
ETREGETQSS ATNKVLRRKD CREWTNDLHA KFVKTVQQLG EGRCYPKEIL EVMKHDVPDL  120
TRMQVASYLQ KCRRKNLRSP EERKYICYPS GQGSSNDSKK RSSFQEYGTM PRLQTNVPIL  180
QHEPDQTQRG TYFPISTLNT NKSFSRGESS TQQQLYRPQL QVQPRYLNIE NRFNNSFFPA  240
QSYVGDRLQQ HEPLVEMLNS QGLQDSIIKN TSYSPVLEFN SGDHHNQSDY SLDLNVTHGE  300
TYSGCRIIMG TEIGNATNSE YNLNVNVDNV SNSYVGNTTA NELGVANANF QQYILEPNMS  360
NPSSIIGASY ANDIEGGDSN KKKKCDAYFE FNDMGYLFQN HGPSSSNLPN EQGTEFDQVY  420
SDDQVSAFIY FHV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400056813
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015164525.10.0PREDICTED: two-component response regulator ARR10-like
TrEMBLM1D8U30.0M1D8U3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000851380.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8132384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.53e-11ARR-B family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]