PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400056931
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 379aa    MW: 42465 Da    PI: 7.3815
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400056931genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.21e-131150342
                          --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                          ien+  r+v++ kR +g l KAeEL +LCd+e a i++s+
  PGSC0003DMP400056931 11 IENENDRKVSYKKREKGFLTKAEELRTLCDVEMAAILYSP 50
                          9*************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.6E-13160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.89149IPR002100Transcription factor, MADS-box
CDDcd001204.51E-18359No hitNo description
PRINTSPR004043.9E-9323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.15E-17395IPR002100Transcription factor, MADS-box
PfamPF003192.0E-141157IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MPRNKVKFAL IENENDRKVS YKKREKGFLT KAEELRTLCD VEMAAILYSP FNNEPKVFPN  60
NGAAITTFEK LVELPTLKKS KNMVTSDEFT KKRIEKLNEK LLKVRKKNKV KEVTNEMYEM  120
LKGKEISIDM HPYDLNDLSY VIKQKLIQVS KAMKKNVCEQ DSTSNVPQSF VGPMIPGGTN  180
IEGSKASVLS PTSFPLSIVP LFSPLTILGG TYFERREDSL FAPNVAPTRM PQEMFHQEDP  240
LRTPFQEFPL VDSSQFPASP LSFSHMFPPM VPQLFSPLPL LMDFSVPSTT TDSPIPLAPL  300
ASVLSAPVCS PMTSQIFSTT SACVSMPMNN YKNYSLDIPE SLSFSELLNW NNGEAMTLLE  360
DPSLNNINVK DLKNTNNN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400056931
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006341870.11e-143PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLM1D9360.0M1D936_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000852560.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13291040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65300.13e-21AGAMOUS-like 38
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]