PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400057108
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 182aa    MW: 20527.1 Da    PI: 4.8931
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400057108genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.43e-062547123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          ykC +C ++F+++  L+ H+r+H
  PGSC0003DMP400057108 25 YKCRICLEVFTSSQGLVGHQRKH 47
                          9*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.8E-52451No hitNo description
Gene3DG3DSA:3.30.160.606.5E-42547IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00972547IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.6792552IPR007087Zinc finger, C2H2
PROSITE patternPS0002802747IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MQQQQPSSKM AHQGLVTRAA GIWYYKCRIC LEVFTSSQGL VGHQRKHMSQ GTWIRVPHVV  60
VPSPAPDPLL IQVDLFVRRL NQQIPYGNRL NVNLLLASTP IESISLPIES SGSITVSAEW  120
MREKENKDKE VEQSSSVTIS ADWMCEKESK DQEAEQSSSI TVTADWMREK ENDDQEVEQL  180
D*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400057108
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006362618.11e-116PREDICTED: uncharacterized protein LOC102583262
TrEMBLM1D9H41e-131M1D9H4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000854331e-132(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6643821
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]