PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400057238
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GeBP
Protein Properties Length: 141aa    MW: 15810.2 Da    PI: 10.7355
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400057238genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573621.5e-192672997
                DUF573 29 spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97
                          +ps+ + af+ef++++++++vsksq+++K++rLKkK+ ++vk+   g+e++f+k +d  ife+sk+iWg
  PGSC0003DMP400057238  2 KPSAKMFAFHEFIREKLQVEVSKSQISDKVKRLKKKYLTNVKD---GEETVFTKGQDFLIFEHSKRIWG 67
                          5778899**********************************99...**********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.2E-15367IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MKPSAKMFAF HEFIREKLQV EVSKSQISDK VKRLKKKYLT NVKDGEETVF TKGQDFLIFE  60
HSKRIWGAPG TSNGGVKENV NNNTNGKATK TVKVKKSSEP KENGEEPETT PPIEKRPITK  120
KSVQTHRNLN LLLISKAKMG *
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional regulator. Binds specifically to the B-box motif, a promoter element that is required for the tuber-specific and sucrose inducible expression of the patatin gene. {ECO:0000269|PubMed:12028578}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400057238
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001305529.18e-54STOREKEEPER protein
SwissprotQ94IK27e-55STK_SOLTU; STOREKEEPER protein
TrEMBLM1D9S13e-96M1D9S1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000855635e-97(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23692041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.12e-12DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]