PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400057277
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 129aa    MW: 15452.8 Da    PI: 9.8224
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400057277genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B381.96.1e-261199190
                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3  1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
                          f k+ltp dv++++rlv+pkk+a++h  +    ++ +l+++d+s   W++k++y+k+s+++++t+GW +Fvk++ L+++D+++F l ++++
  PGSC0003DMP400057277 11 FRKELTPTDVGRNSRLVIPKKYATTHfpQ---IQDEELIIYDTSRTLWKFKYRYCKRSRSFLFTRGWLNFVKDKCLRAKDMIIFNLCESKN 98
                          89************************633...35668************************************************987644 PP

                          E CS
                    B3 90 f 90
                          +
  PGSC0003DMP400057277 99 G 99
                          4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-27897IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-23997IPR015300DNA-binding pseudobarrel domain
CDDcd100178.57E-251093No hitNo description
PROSITE profilePS5086313.56311116IPR003340B3 DNA binding domain
PfamPF023628.7E-231199IPR003340B3 DNA binding domain
SMARTSM010197.2E-1711108IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
DNVEFLYNEL FRKELTPTDV GRNSRLVIPK KYATTHFPQI QDEELIIYDT SRTLWKFKYR  60
YCKRSRSFLF TRGWLNFVKD KCLRAKDMII FNLCESKNGT KVNNCNTFVI DVVKNIEVLP  120
MDHQRRNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A8e-20109813107DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400057277
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754511e-114HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350629.17e-56PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6881e-25RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLM1D9V33e-90M1D9V3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000856025e-91(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52522339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.15e-28RAV family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]