PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400057351
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 229aa    MW: 26193.6 Da    PI: 5.1458
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400057351genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.27.5e-122311140
                          HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
                SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviif 40
                          +t+  R++g+ KK +ELS+LCd++ ++ii 
  PGSC0003DMP400057351  2 TTLVTRKAGLVKKISELSILCDIKTCMIIH 31
                          8***************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006610.708130IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-11262IPR002100Transcription factor, MADS-box
PfamPF003192.1E-8233IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MTTLVTRKAG LVKKISELSI LCDIKTCMII HEGNNDQIWP NDPNEVTELI NLYKNQPFEG  60
RTKRGKTLSN YFEDDQKKRA GIKVEKYPTW DSRFDYLCEK ELQNLGGVVE KRMEKAKGKI  120
ELLKSMNVHI GSSSLSHQQI WDNNLMNQTT TLWPISNLNS FTDYNNFFQS NIPISGVNSM  180
GAGMDNGLLT IEDYQFCNAN YSMMIEAENW SENDGRDLQK PSYIILEN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400057351
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754504e-54HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350347.11e-136PREDICTED: serum factor response D-like
TrEMBLM1DA131e-169M1DA13_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000856761e-170(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63421232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.12e-12M-type_MADS family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]