PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400057446
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 127aa    MW: 14681.6 Da    PI: 7.4346
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400057446genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.61.7e-16311071798
                           E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
                    B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                           ++p kfa++ ++   +++++ led+ gr+W  ++  +++ g+  +++GW +F  ++++k+g+f+vF+++ + + f   v++fr
  PGSC0003DMP400057446  31 CFPPKFARSVSHL--TDREIYLEDSCGRRWMATV--CNYNGSLAIQQGWAKFSAEHDVKVGEFFVFHYVPNdQHF--IVQIFR 107
                           5799***999755..5669***************..********************************9643555..**9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010196.6E-421109IPR003340B3 DNA binding domain
SuperFamilySSF1019361.53E-1827111IPR015300DNA-binding pseudobarrel domain
PfamPF023623.0E-1431107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-1631111IPR015300DNA-binding pseudobarrel domain
CDDcd100176.13E-1532107No hitNo description
PROSITE profilePS5086311.75832109IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MNEVDLCWNG SSKIQELERF CNRSISHPPH CFPPKFARSV SHLTDREIYL EDSCGRRWMA  60
TVCNYNGSLA IQQGWAKFSA EHDVKVGEFF VFHYVPNDQH FIVQIFRISG CEKINFDSYI  120
CKGKQN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400057446
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755227e-85HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015159850.14e-54PREDICTED: B3 domain-containing protein Os02g0598200-like
TrEMBLM1DA841e-90M1DA84_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000857712e-91(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22102352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24650.19e-08DNA binding;DNA binding;sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]