PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400057504
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 186aa    MW: 21547.7 Da    PI: 10.6864
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400057504genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.51.5e-131462148
                          TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT+ Ed+ll +++k +G g  W++ +++ g+ R++k+c++rw +yl
  PGSC0003DMP400057504 14 KGSWTKKEDLLLTEYIKDFGEGtGWRSLPKKAGLLRCGKSCRLRWVNYL 62
                          799*******************99*********99************97 PP
2Myb_DNA-binding52.11.5e-1668111146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           rg +T+eEd+l+v++ ++lG++ W++Ia ++  gRt++++k++w++
  PGSC0003DMP400057504  68 RGTFTPEEDDLIVRLYTLLGSR-WSLIAGRIS-GRTDNDVKNYWNT 111
                           899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.894962IPR017930Myb domain
SuperFamilySSF466894.03E-2611109IPR009057Homeodomain-like
SMARTSM007176.4E-101364IPR001005SANT/Myb domain
PfamPF002493.1E-121462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-201569IPR009057Homeodomain-like
CDDcd001672.87E-61662No hitNo description
PROSITE profilePS5129421.83663117IPR017930Myb domain
SMARTSM007171.1E-1267115IPR001005SANT/Myb domain
PfamPF002494.9E-1468111IPR001005SANT/Myb domain
CDDcd001671.61E-870113No hitNo description
Gene3DG3DSA:1.10.10.601.5E-2270117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MGRKPCCSKE GLKKGSWTKK EDLLLTEYIK DFGEGTGWRS LPKKAGLLRC GKSCRLRWVN  60
YLKPGLNRGT FTPEEDDLIV RLYTLLGSRW SLIAGRISGR TDNDVKNYWN TSLLKKLKGQ  120
GNEPQKHKSQ EKKRRRKKEK PNVSSQINQK NNDENKTRRR KKEKIVEKHN IEDEVATKIE  180
EQPHT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3zqc_A4e-25141412127MYB3
3zqc_D4e-25141412127MYB3
3zqc_G4e-25141412127MYB3
3zqc_J4e-25141412127MYB3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125135KHKSQEKKRRR
2131136KKRRRK
3131137KKRRRKK
4157162RRRKKE
5158163RRKKEK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400057504
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-164HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015084779.11e-109myb-related protein 308-like
SwissprotQ388514e-57MYB6_ARATH; Transcription repressor MYB6
TrEMBLM1DAD31e-131M1DAD3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000858291e-132(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.12e-58myb domain protein 6
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]