PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400057567
Common NameLOC102593384
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 182aa    MW: 20775.5 Da    PI: 4.558
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400057567genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.75.4e-1222511342
                          HHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifss 42
                          +  R++ + KKA+ELS+LCd++v++i f +
  PGSC0003DMP400057567 22 LGERLASLCKKAYELSILCDVKVSIISFTP 51
                          567***********************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006611.76250IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-131492IPR002100Transcription factor, MADS-box
PfamPF003191.2E-91452IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MTGKGVCWTT RNLDEGKRKK ILGERLASLC KKAYELSILC DVKVSIISFT PGETDNFTWP  60
SLTEANEIVT NYLACPEKQR QYKLVEHEAY LQSIVNDREK EIMELEKMAE EKEMENLFNQ  120
LVEGRKRFDE FDVCDIKGLL NLFNDKRAKL DQMEMQLSGN VANEIGANDN YAGEENDGHP  180
N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400057567
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006356445.11e-133PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLM1DAI11e-131M1DAI1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000858921e-132(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.11e-14AGAMOUS-like 96
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]