PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400057580
Common NameLOC102593222
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 220aa    MW: 25138.8 Da    PI: 5.8044
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400057580genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.49e-1419481240
                          HHHHHHHH.HHHHHHHHHHHHT-EEEEEEE CS
                SRF-TF 12 tfskRrng.ilKKAeELSvLCdaevaviif 40
                          +  kRr++ +lKKAeELS+LCd+eva+iif
  PGSC0003DMP400057580 19 SILKRRETsLLKKAEELSILCDVEVAIIIF 48
                          445666554********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.638148IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-4160IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.76E-161294IPR002100Transcription factor, MADS-box
PfamPF003193.5E-121451IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MATKRLRDTR NYSENVRNSI LKRRETSLLK KAEELSILCD VEVAIIIFRP GKIQPIAWKS  60
TSMAQDVLTR YLSFIEFKRL EKLVTHEDYL QKKVDKKEEH ISKLEKMNEA KEMEILFNQL  120
VEGKSIDELD AREMKGLLKV FAAKMAKLDE RKKEVNQPPN PPSNKENITL LASPMEESFN  180
DPWFIHTIAT LGDGSGIEPA PKEGNDINVE DDGHSKDLD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400057580
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755240.0HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006344960.11e-160PREDICTED: MADS-box transcription factor PHERES 2-like
TrEMBLM1DAJ01e-159M1DAJ0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000859051e-159(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.14e-17AGAMOUS-like 96
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]