PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400058004
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 232aa    MW: 25301.3 Da    PI: 8.2115
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400058004genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.0002198120123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ykC+ Cgk F++   L  H  +H
  PGSC0003DMP400058004  98 YKCSVCGKGFRSYQALGGHKASH 120
                           9***********99999888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.67E-697120No hitNo description
Gene3DG3DSA:3.30.160.601.8E-498120IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.8E-1298122IPR007087Zinc finger, C2H2
SMARTSM003550.007598120IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.55498120IPR007087Zinc finger, C2H2
PROSITE patternPS000280100120IPR007087Zinc finger, C2H2
SuperFamilySSF576672.67E-6153180No hitNo description
PfamPF139127.9E-6157182IPR007087Zinc finger, C2H2
SMARTSM00355310158180IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MALEASNYPT GTSNPQTFQF QSKGQQQLRY LENWTKGERS KRSRSMDRQP TEEEYLVLRL  60
IMLARSDGSV NQVRSLPLPV PVMKIHTPSK KIEEKMLYKC SVCGKGFRSY QALGGHKASH  120
QKLITGGGGG DDQLTTSTTT NATGTTSSCN GNGSGRTHKC LICHKCFPTG QALGGYKRCH  180
YDGDNANSSV STSVRVTEEE DVGSTISHPD FDLNIPVLPE FCPRFGSGED E*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400058004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006343008.11e-174PREDICTED: zinc finger protein ZAT10-like, partial
TrEMBLM1DBH91e-173M1DBH9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000863291e-173(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7352495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.13e-38salt tolerance zinc finger
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]