PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400058124
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family B3
Protein Properties Length: 266aa    MW: 29778 Da    PI: 5.7734
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400058124genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.32.3e-1244114177
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                           f+k ++ps+v+   +l++pk+f+ +h  k   +  ++l de+g +++ k+ + k++    l++GW++F  a++Lk+g
  PGSC0003DMP400058124  44 FLKCMLPSHVTGGFWLSFPKRFCISHLPK--HDANVVLVDEDGDEFSTKYLIGKSG----LSGGWRGFSIAHNLKSG 114
                           89************************433..4568***************666665....9**************98 PP
2B345.21.7e-141462201799
                           E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                    B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                           ++pk+f+ +h  k   +  ++l de+g +++ k+    ++++  l++GW++F  a++L e+D+vvF+l+++ +f  +v ++r+
  PGSC0003DMP400058124 146 SFPKRFCISHLPK--HDANVVLVDEDGDEFSTKY--LIGKCG--LSGGWRGFSIAHNLVENDVVVFQLIETCKF--KVYILRE 220
                           78********433..4568***************..555555..9************************99999..8888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.2E-1337114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-1637114IPR015300DNA-binding pseudobarrel domain
CDDcd100173.71E-2142145No hitNo description
PfamPF023623.1E-1044114IPR003340B3 DNA binding domain
SMARTSM010193.2E-944132IPR003340B3 DNA binding domain
PROSITE profilePS508637.28844114IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-6115144IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.7E-5115145IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.362130221IPR003340B3 DNA binding domain
SMARTSM010197.2E-11136221IPR003340B3 DNA binding domain
CDDcd100171.27E-18141219No hitNo description
PfamPF023622.4E-12146220IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.4E-15146222IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-17146221IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MIFILDFTSI GRKVQTDNSV DISSSAQLRA EIFQTTLSSE FPNFLKCMLP SHVTGGFWLS  60
FPKRFCISHL PKHDANVVLV DEDGDEFSTK YLIGKSGLSG GWRGFSIAHN LKSGLSGGWR  120
GFSIAHNLVE NDVVVFQLIE TCKFKSFPKR FCISHLPKHD ANVVLVDEDG DEFSTKYLIG  180
KCGLSGGWRG FSIAHNLVEN DVVVFQLIET CKFKVYILRE NCLSHIDVAV VLMDFIVEAH  240
NEDPNEKMNM CESNDDKYLE PPKES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400058124
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ69V365e-32Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLM1DBS40.0M1DBS4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000864490.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA131841219
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.17e-34B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]