PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400058211
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 182aa    MW: 20676.7 Da    PI: 9.9021
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400058211genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.33.3e-122369355
                   AP2  3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          y+GVr ++ rg++     d +++   +  ++lg+f+t eeAa+a+++a + ++g
  PGSC0003DMP400058211 23 YRGVRKRS-RGKYK----DqFTNH--NVCVWLGNFDTQEEAARAYDKATRMYHG 69
                          9****888.8**88....447664..4*********************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.72277IPR001471AP2/ERF domain
SMARTSM003807.1E-172283IPR001471AP2/ERF domain
CDDcd000182.75E-162379No hitNo description
PRINTSPR003676.3E-72334IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-192379IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-152379IPR016177DNA-binding domain
PfamPF008474.0E-62369IPR001471AP2/ERF domain
PRINTSPR003676.3E-74359IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-6102159IPR016177DNA-binding domain
PROSITE profilePS5103212.391102157IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-11102159IPR001471AP2/ERF domain
SMARTSM003803.0E-4102163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MTERGTCIVV VVTTTVTLNE VPYRGVRKRS RGKYKDQFTN HNVCVWLGNF DTQEEAARAY  60
DKATRMYHGA KAKLNFPMSN EDNLENGIVA IVTIVVTPTE IRYRGVRKMP LGKSKDDITN  120
QKVRVWLGTI DRKEEDATTC VKATRMYRGL KAKINFPKSN EDNLENEEFN LELTLALSAR  180
K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400058211
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015163300.11e-125PREDICTED: ethylene-responsive transcription factor 11-like
TrEMBLM1DBZ21e-132M1DBZ2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000865361e-132(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.17e-17erf domain protein 9
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]