PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400058229
Common NameLOC107063515
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 145aa    MW: 16511.7 Da    PI: 8.7548
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400058229genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.47.6e-13248149
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                          k ie+k  ++vtfskR++g++KK    S+L++a+v +  fs++gk y y
  PGSC0003DMP400058229  2 KLIESKEAQNVTFSKRKKGLFKKEDKYSTLTGADVGL--FSPSGKPYSY 48
                          569********************************97..8888888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-10151IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.708152IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-14163IPR002100Transcription factor, MADS-box
PfamPF003191.5E-16448IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MKLIESKEAQ NVTFSKRKKG LFKKEDKYST LTGADVGLFS PSGKPYSYGS TSIDEITDKS  60
FDLKLDDRQG EGDHADVGKS NVFEAFEELR KEIQALDKKQ KEHPHSDILL HKYMLEYMAI  120
KSRLDKIKKD KKGKSIHEPE KEES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400058229
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2329356e-98AC232935.1 Solanum lycopersicum chromosome 9 clone C09HBa0067J16, complete sequence.
GenBankHG9755216e-98HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015170946.12e-99PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLM1DC065e-98M1DC06_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000865549e-99(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17801260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.12e-14AGAMOUS-like 29
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]