PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400058241
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 266aa    MW: 29289.9 Da    PI: 8.4793
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400058241genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.49.4e-151156147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          + rW + Edell  +vk++G ++W++I + +  gR++k+c+ rw + 
  PGSC0003DMP400058241 11 KRRWNPKEDELLQMLVKEHGAENWSLIGQLIS-GRSGKSCRFRWCNQ 56
                          579*****************************.***********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.557661IPR017930Myb domain
SMARTSM007171.2E-121059IPR001005SANT/Myb domain
SuperFamilySSF466897.52E-181281IPR009057Homeodomain-like
CDDcd001671.90E-121355No hitNo description
Gene3DG3DSA:1.10.10.603.6E-221375IPR009057Homeodomain-like
PfamPF139212.1E-161472No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
METSKKTSMI KRRWNPKEDE LLQMLVKEHG AENWSLIGQL ISGRSGKSCR FRWCNQLNPQ  60
VEHQPFTPEE DNTIIRAQAK LDLILENPQP LLKKSLSIRE GKNSGIPYRS AQSNLGFHRF  120
PQLCVYPHIA AMGQISPLST FSPVIPDPLV FLNTPRSDLG NLGLSRCPQL SLYPPAPLGE  180
ILPLLSVSPV MPEPSTSLSL CVSNMNNLGL SRLPQLILYP PSAPLGEILT LSSSAPVIPD  240
PSTDLSLSLP GVRSTKYLNP ENRIE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-13881477B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400058241
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015159282.10.0PREDICTED: transcriptional activator Myb-like
TrEMBLM1DC150.0M1DC15_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000865660.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1853534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.13e-29myb domain protein 73
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]