PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400058270
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 141aa    MW: 17026.7 Da    PI: 9.1329
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400058270genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM45.13.2e-14151405127
                   NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                           + F P++ +++++ L   ++++ le ++ ++ vd+y   e w++ +   ++++  yf ++ +k++++ kr +r++ +g+Wk +   k+v
  PGSC0003DMP400058270  15 YYFYPKERDVIKYLLVFMIDESLLEQHQYMQLVDLYADkESWEILEG--TNTNAGYFITPLKKEKPHHKRFKRIVGEGTWKIQDPAKKV 101
                           68*********888888888888999888*****9976489**9633..345677********************************** PP

                   NAM  93 lskkgelvglkktLvfy....kgrapkgektdWvmheyr 127
                           +++kg+l+g  + + +     k++  k    +W+m ey+
  PGSC0003DMP400058270 102 FDEKGRLMGYVHHMKYTpctnKKSIIKELFDEWLMTEYS 140
                           ****************9654333333444689******5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100516.87811140IPR003441NAC domain
SuperFamilySSF1019415.1E-1215139IPR003441NAC domain
PfamPF023657.2E-715140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MIVRDHHQPK RYSNYYFYPK ERDVIKYLLV FMIDESLLEQ HQYMQLVDLY ADKESWEILE  60
GTNTNAGYFI TPLKKEKPHH KRFKRIVGEG TWKIQDPAKK VFDEKGRLMG YVHHMKYTPC  120
TNKKSIIKEL FDEWLMTEYS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400058270
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019068304.12e-74uncharacterized protein LOC101262060
TrEMBLM1DC361e-100M1DC36_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000865951e-101(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10241385
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]