PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400058294
Common NameLOC107062306
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 187aa    MW: 20959.8 Da    PI: 7.3862
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400058294genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.81.9e-20345244
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                          r +n++n qvtfskRr g++KKA ELS+LC+a+v v++fs + 
  PGSC0003DMP400058294  3 RMQNERNLQVTFSKRRDGVFKKATELSTLCGADVVVVVFSLSK 45
                          779************************************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-20153IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.694154IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.36E-21265IPR002100Transcription factor, MADS-box
PfamPF003196.2E-22349IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-81631IPR002100Transcription factor, MADS-box
PRINTSPR004049.3E-83152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MARMQNERNL QVTFSKRRDG VFKKATELST LCGADVVVVV FSLSKKPYSC GHPSVESIMN  60
RFLVENPPTD IDAPNPIVIA HQNANTDEIN TKLNRLEIPF EREKKYGEAL QSSRKELPIE  120
KLSSFDFKNL CKALEVADEA IERVLSIKKE CGFEFPYQTI GSAFTPLRVT KHSSSDSYER  180
PSGSNE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400058294
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2430260.0AC243026.1 Solanum tuberosum chromosome 11 clone RH059C07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168304.11e-136PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLM1DC551e-135M1DC55_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000866191e-136(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.15e-28AGAMOUS-like 61
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]