PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400058316
Common NameLOC107062622
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 200aa    MW: 22224 Da    PI: 9.8609
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400058316genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.74.7e-123984247
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          +rW+++E+  ++ +  +lG+g+W+ Ia+++   Rt+ q+ s+ qky
  PGSC0003DMP400058316 39 KRWSEDEQRAFLIGLDKLGKGNWTQIAKEFVPSRTPTQVASHAQKY 84
                          69*****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.9973389IPR017930Myb domain
SMARTSM007174.8E-103787IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-113786IPR009057Homeodomain-like
SuperFamilySSF466891.87E-143890IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-143988IPR006447Myb domain, plants
PfamPF002493.2E-103984IPR001005SANT/Myb domain
CDDcd001671.99E-94085No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MTKETIKLFG VEISVNNVSS SVEESTSDKG GMSRSCKGKR WSEDEQRAFL IGLDKLGKGN  60
WTQIAKEFVP SRTPTQVASH AQKYFDRQKE KRALKRNKSS VFDINLDQES SNTCPELVSK  120
RALKDNKKKG KQVLNEESPI SPMPISYRLP PNGSYGYCYV PMNNYQFNFV SSSTNATPVV  180
HRASSQSSSA SLDNIDLTL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400058316
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168973.11e-147PREDICTED: transcription factor MYB1R1-like
TrEMBLM1DC731e-146M1DC73_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000866411e-146(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13677916
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.16e-24MYB_related family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]