PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400058338
Common NameLOC102590928
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 129aa    MW: 14650 Da    PI: 7.9166
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400058338genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.47.7e-13754350
                          --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                          ++ k+++   +  R++ i  K  EL +LCd++v+ +i +++g+l++++
  PGSC0003DMP400058338  7 SKKKTKNLKPYQGRKECIKTKSMELATLCDIKVCTVITGPNGELQTWP 54
                          5667777778999**********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.62E-12881IPR002100Transcription factor, MADS-box
PfamPF003194.6E-91953IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MAEEDQSKKK TKNLKPYQGR KECIKTKSME LATLCDIKVC TVITGPNGEL QTWPDNLDAC  60
KEVLDLYSLN LKPEKKHKES VPEPEEEQEE KDLLMLVESK LAAVNKIIRL LENKNVVVAD  120
KGKRKRIE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400058338
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006359371.15e-87PREDICTED: uncharacterized protein LOC102590928
TrEMBLM1DC881e-85M1DC88_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000866632e-86(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37231639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41200.15e-10AGAMOUS-like 75
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]