PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400058560
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 186aa    MW: 21150.9 Da    PI: 7.2829
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400058560genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM41.93.1e-13611710128
                   NAM  10 tdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkdkevlsk 95 
                           +de+l+  yL + v+g ++ + + i+ v++y   +P++L  +  +++++ + F++ +k +++gk+ nra+    g Wk++   ++v++k
  PGSC0003DMP400058560   6 EDEQLI-GYLINFVTGMPVGC-DEIRIVELYGNkKPSQLFDT--TTTNHHHVFTQLKKIKENGKNFNRAIVggGGSWKESYPMEHVVDK 90 
                           599999.9**********999.6699999886549****633..3467899*****************76544889************* PP

                   NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           +++++g+kk + f   +    e+  W+m++y+l
  PGSC0003DMP400058560  91 NKSVIGIKKEFRFK--E----ENHVWIMKDYSL 117
                           *************8..2....2458******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100512.0351142IPR003441NAC domain
PfamPF023653.7E-66117IPR003441NAC domain
SuperFamilySSF1019412.09E-147141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MGTNIEDEQL IGYLINFVTG MPVGCDEIRI VELYGNKKPS QLFDTTTTNH HHVFTQLKKI  60
KENGKNFNRA IVGGGGSWKE SYPMEHVVDK NKSVIGIKKE FRFKEENHVW IMKDYSLIDS  120
KLKGLSGRIQ HEGFVVCRIM RDSSSSQCQG SVKSFAQENH DECSVRQEVV HQETHPDVYT  180
QFNVS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400058560
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-117HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233985.16e-80NAC domain-containing protein 96-like
TrEMBLM1DCP91e-135M1DCP9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000868851e-136(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33811041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.16e-08NAC domain containing protein 53
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]