PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400058566
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 217aa    MW: 24815.8 Da    PI: 5.507
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400058566genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.16.4e-1159102447
                           S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           WT+eE+ l++ +   lG+g+Wk I+++    +t+ q+ s+ qk+
  PGSC0003DMP400058566  59 WTEEEHRLFLIGLYTLGKGNWKDISKEYVVSKTARQVGSHAQKF 102
                           *****************************99***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.75950107IPR017930Myb domain
SuperFamilySSF466894.49E-1453107IPR009057Homeodomain-like
SMARTSM007171.1E-455105IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.5E-1457105IPR006447Myb domain, plants
PfamPF002492.8E-859101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-65997IPR009057Homeodomain-like
CDDcd001677.67E-759103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MEVLNNTPPP EVENMEVLNE TPPPQAQNME VLNDTPPPQV QNMEVHNGTS PHRRRVILWT  60
EEEHRLFLIG LYTLGKGNWK DISKEYVVSK TARQVGSHAQ KFFSRMNCKT PVERRRASIN  120
DIRTITSNPM TPIIVPMDHQ VNSDIPTHIN NHQIASFLQP ESYPYTFGVP YLNNNPNNQV  180
EAYDNNSLVM DQIPNGHNFE ILNHVEAYDN NSFVMD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400058566
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-180HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM1DCQ31e-158M1DCQ3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000868911e-159(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52342032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.15e-24MYB family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]