PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400058631
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 148aa    MW: 17440.1 Da    PI: 9.8425
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400058631genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.22.4e-141050242
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                          +ien++ r v++ kR++g l KA EL +LCd+e a +i s+
  PGSC0003DMP400058631 10 FIENNTERRVSYRKRQKGFLTKARELNTLCDVELATLINSP 50
                          8**********************************999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.465149IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-15160IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-10323IPR002100Transcription factor, MADS-box
CDDcd001201.89E-16359No hitNo description
SuperFamilySSF554551.44E-19395IPR002100Transcription factor, MADS-box
PfamPF003199.2E-141054IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MVRKKVKLAF IENNTERRVS YRKRQKGFLT KARELNTLCD VELATLINSP YHNEPEVFPN  60
NEAAISIFTK FINLPEEKKS KNMKTLEKIT TKRIEKIEKE LEKVRKENKK IEYTNQMYGL  120
LNGEEMPNSR HPEDLNDLCY VINKTYN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225RKKVKLAFIENNTERRVSYRKRQK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400058631
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-166HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015169310.19e-91PREDICTED: agamous-like MADS-box protein AGL80
RefseqXP_015169314.11e-90PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLM1DCV61e-101M1DCV6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000869561e-102(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13291040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26630.11e-20M-type_MADS family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]