PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400058670
Common NameLOC102585525
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 246aa    MW: 27695.3 Da    PI: 6.3035
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400058670genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.5e-20100150255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr+++ +g+++AeIrdp   + k +r++lg+f+ta +Aaka+++a+ kl+g
  PGSC0003DMP400058670 100 HYRGVRRRP-WGKFAAEIRDP---NrKGTRVWLGTFDTAVDAAKAYDRAAFKLRG 150
                           8********.**********9...6566*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-3299159IPR001471AP2/ERF domain
PfamPF008478.7E-14100150IPR001471AP2/ERF domain
CDDcd000181.12E-32100158No hitNo description
SuperFamilySSF541711.9E-23100160IPR016177DNA-binding domain
PROSITE profilePS5103224.447100158IPR001471AP2/ERF domain
SMARTSM003807.6E-38100164IPR001471AP2/ERF domain
PRINTSPR003671.2E-13101112IPR001471AP2/ERF domain
PRINTSPR003671.2E-13140160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MGSSPQGTCS SLDSIREHLL DDDVAFMEYY CSNTCFSFET TQTSKTEFDG FFEIEAKPHV  60
ISSNSPKQSN FKERKPSLNV AIPAKAVVVE KVEVESEKKH YRGVRRRPWG KFAAEIRDPN  120
RKGTRVWLGT FDTAVDAAKA YDRAAFKLRG SKAILNFPLE VANFKQLQND DDDDVEIPQP  180
VNSSGNNKRV RETEQLVINK ERKIEEERVI PMAPPLTPSN WSTIWDGKGI FEVPPLSPLS  240
QLVMI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-3299161163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400058670
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015169357.10.0PREDICTED: ethylene-responsive transcription factor 5-like
SwissprotQ9LW485e-99ERF5_NICSY; Ethylene-responsive transcription factor 5
TrEMBLM1DCY50.0M1DCY5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000869950.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9632389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.14e-43ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]