PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400058755
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 162aa    MW: 18782.6 Da    PI: 9.9195
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400058755genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM93.73e-29161451128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknr..atksgyWkat 86 
                           lp Gf+F Ptdeel   yLk k ++  +    +++++diy++eP++L   v+++ + ++yfF+ ++kk  +g++ +r     +gyWk+t
  PGSC0003DMP400058755  16 LPIGFHFVPTDEELN-MYLKLKGSNGYILP-GIFTDLDIYQYEPHELSGFVEEHWNgRMYFFTLAKKKFGNGNKLERnlHSGKGYWKST 102
                           699**********97.99*99999988666.78**************966655544477***************9994345699***** PP

                   NAM  87 gkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128
                              k++++ +++ +g+k+ L++ k   +++kg+kt+W+m eyr+
  PGSC0003DMP400058755 103 QARKDIVK-NNNIIGTKTPLAYIKSspNNSKGKKTSWLMSEYRF 145
                           *******9.999***********764478899**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-3113150IPR003441NAC domain
PROSITE profilePS5100531.35316161IPR003441NAC domain
PfamPF023651.9E-1517144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MALSNYEYDR QWKNILPIGF HFVPTDEELN MYLKLKGSNG YILPGIFTDL DIYQYEPHEL  60
SGFVEEHWNG RMYFFTLAKK KFGNGNKLER NLHSGKGYWK STQARKDIVK NNNIIGTKTP  120
LAYIKSSPNN SKGKKTSWLM SEYRFPSNSP LLIKEVCKLF I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-1871456140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400058755
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754511e-77HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015165309.13e-98PREDICTED: NAC domain-containing protein 83-like
TrEMBLM1DD441e-115M1DD44_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000870801e-116(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1556777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.11e-21NAC domain containing protein 32
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]