PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400058804
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 182aa    MW: 20878 Da    PI: 9.5009
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400058804genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.23.5e-122368354
                   AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                          y+GVr ++ + ++ Ae   ++++  +  ++lg+f+t eeAa+a+++a + ++
  PGSC0003DMP400058804 23 YSGVRKRS-QAKYKAE---FTNQ--NVCVWLGNFDTQEEAARAYDKATRMYH 68
                          99***888.9******...9774..4********************987776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.7E-122283IPR001471AP2/ERF domain
PROSITE profilePS5103215.4222277IPR001471AP2/ERF domain
CDDcd000183.56E-132379No hitNo description
SuperFamilySSF541712.35E-142379IPR016177DNA-binding domain
PfamPF008473.0E-72365IPR001471AP2/ERF domain
PRINTSPR003673.6E-52334IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-182379IPR001471AP2/ERF domain
PRINTSPR003673.6E-54359IPR001471AP2/ERF domain
CDDcd000189.26E-12102157No hitNo description
SMARTSM003802.6E-5102163IPR001471AP2/ERF domain
PROSITE profilePS5103214.117102157IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-13102158IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-9103158IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MTERGNCIVV VVTTTVTPNE VPYSGVRKRS QAKYKAEFTN QNVCVWLGNF DTQEEAARAY  60
DKATRMYHDA KSKLNFPMSN EDNLENGIVA IVTIVVIPIE IRYRSVRKMP WGKYKTNTTN  120
QKLCVWLGTF DRKEEPAKTY LKAMWMYRGL KAKINFPTLN EDNLENEELN LELTLALSGR  180
K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400058804
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015163300.12e-97PREDICTED: ethylene-responsive transcription factor 11-like
TrEMBLM1DD791e-132M1DD79_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000871291e-133(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.13e-15erf domain protein 9
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]