PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400058876
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Nin-like
Protein Properties Length: 370aa    MW: 41044.8 Da    PI: 5.0944
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400058876genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK54.62.2e-17186234452
                RWP-RK   4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                            i+ + l++++ ++++dAAk+L v+  +LKriCR++ I+RWPh k +++
  PGSC0003DMP400058876 186 GITRKILEQHYGMTLEDAAKDLHVSRATLKRICRENEIARWPHHKTRKV 234
                           699999***************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151911.888173258IPR003035RWP-RK domain
PfamPF020426.1E-19187234IPR003035RWP-RK domain
SuperFamilySSF542776.54E-18273364No hitNo description
SMARTSM006667.9E-15283365IPR000270PB1 domain
PROSITE profilePS5174519.516283365IPR000270PB1 domain
PfamPF005643.6E-16284364IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2406.6E-16285364No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MKEQFPGFIV APGNEVVKVS PSDELDSFEI GQSLPSVESV QDGGETTEIG QRLSSVQSVQ  60
DGGETTEIDS LCQQSNLQNR EDNVAAALLV TSCSSDKRHS LNCERTVEVD PLLPHPIEEA  120
VTNRGKVNLD VAHDDHIKDT SEIMQLDSHF EQSNLETNSA GNATTNNEII HSHKKNAIQR  180
IEKDHGITRK ILEQHYGMTL EDAAKDLHVS RATLKRICRE NEIARWPHHK TRKVNVHVSQ  240
GVSLQGAEPY VVDRQCAALS QDKGTDYLGN IRSPATGKPC DTVMTLKVTY RGDMIKFQLS  300
LSSTRVELEG EVEKRLKISL ERFSIKYQDE DDDWILITTD SDLRDGIHSL GLLGRNTMRL  360
VVTPQAADT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400058876
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2316650.0AC231665.1 Solanum tuberosum chromosome 11 clone RH021O18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015167196.10.0PREDICTED: protein NLP5-like
TrEMBLM1DDC40.0M1DDC4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000872010.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10406515
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24020.14e-13NIN like protein 7
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]