PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400059115
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TALE
Protein Properties Length: 127aa    MW: 14759.7 Da    PI: 9.3638
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400059115genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.8e-09691032155
                           HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
              Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                           + +yp+  e+  LA+++gL+ +q+ +WF N+R ++
  PGSC0003DMP400059115  69 NWPYPTDGEKVSLAESTGLDPKQINNWFINQRKRH 103
                           469*****************************985 PP
2ELK25.72.6e-092243122
                   ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                          E K+ L+ KYsgy+ sLk+ F+
  PGSC0003DMP400059115 22 EMKDKLMEKYSGYITSLKHDFC 43
                          679******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037898.1E-102243IPR005539ELK domain
SMARTSM011884.2E-52243IPR005539ELK domain
PROSITE profilePS512139.5162242IPR005539ELK domain
PROSITE profilePS5007111.61243106IPR001356Homeobox domain
SMARTSM003897.3E-945110IPR001356Homeobox domain
SuperFamilySSF466891.15E-1848114IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-2749106IPR009057Homeodomain-like
CDDcd000863.04E-1251105No hitNo description
PfamPF059202.6E-1763102IPR008422Homeobox KN domain
PROSITE patternPS00027081104IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MGGGGGVNNE QQNDELCRSG SEMKDKLMEK YSGYITSLKH DFCKKNYNKG KLPKEATQIL  60
LNWWTTHYNW PYPTDGEKVS LAESTGLDPK QINNWFINQR KRHWKLPSQN MQFPLMETIY  120
GRHFSQ*
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400059115
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754429e-66HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006344511.14e-92PREDICTED: homeobox protein knotted-1-like 2
SwissprotQ84JS62e-35KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLM1DDU82e-90M1DDU8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000874404e-91(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7532480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.18e-38KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]