PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400059142
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 276aa    MW: 31425.7 Da    PI: 8.1544
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400059142genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.8e-171461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          rg W++eEde+l+++++ +G  +W+++++  g+ R++k+c++rw +yl
  PGSC0003DMP400059142 14 RGLWSPEEDEKLINYITNYGHACWSSVPKLAGLQRCGKSCRLRWINYL 61
                          788*******************************************97 PP
2Myb_DNA-binding475.9e-1567109145
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                           rg+++++E  l+++++  lG++ W+ Ia++++ gRt++++k++w+
  PGSC0003DMP400059142  67 RGSFSPQEAALIIELHGILGNR-WAQIAKHLP-GRTDNEVKNFWN 109
                           899*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.6E-27564IPR009057Homeodomain-like
PROSITE profilePS5129417.341961IPR017930Myb domain
SuperFamilySSF466892.58E-2811108IPR009057Homeodomain-like
SMARTSM007178.0E-121363IPR001005SANT/Myb domain
PfamPF002495.8E-151461IPR001005SANT/Myb domain
CDDcd001676.14E-111761No hitNo description
PROSITE profilePS5129424.82662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.0E-2565116IPR009057Homeodomain-like
SMARTSM007175.8E-1566114IPR001005SANT/Myb domain
PfamPF002499.8E-1467110IPR001005SANT/Myb domain
CDDcd001674.51E-1169109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MGHHTCCNKQ KVKRGLWSPE EDEKLINYIT NYGHACWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SPQEAALIIE LHGILGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLHLSH  120
GILPDLSIIF PNYNNLMTNP NPNPSFDNFY SFNPNVPITN SFMSSINSPL ILDQMNNINH  180
NGDLNLTNQV MPNSLPNLSF DSISNDPTWF NFNYPNHLQH DLEYNPSVIK QDNSINSMLT  240
SNISLNCTNG ENFMDSTNAA IKIHQDLMMV RILFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-31141167108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400059142
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069539.10.0transcription factor MYB26-like
TrEMBLM1DDW80.0M1DDW8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000874670.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.23e-80myb domain protein 26
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]