PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400059321
Common NameLOC107061900
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 186aa    MW: 21371.8 Da    PI: 5.9887
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400059321genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00013456123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          y+C+ C++ F++   L  H++ H
  PGSC0003DMP400059321 34 YECNFCKRGFTNAQALGGHMNIH 56
                          99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.01E-73261No hitNo description
Gene3DG3DSA:3.30.160.603.3E-53260IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.2613461IPR007087Zinc finger, C2H2
PROSITE patternPS0002803656IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MASEKINNYS DSSSEDTTID RESEKFNDGI GRSYECNFCK RGFTNAQALG GHMNIHRKDK  60
LKAKQNNQES STKLLSKEAN YVFDNSRYNN NYAPISSHDE LQHHHYSNSY QFHFQLPQNP  120
SYNQHVYNHH HDGSHTRHDN YYDGNNLSLR IGPTLIDDDD EEGGGKKDVD ESELDLELRL  180
GYSNH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400059321
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015167350.11e-135PREDICTED: transcriptional regulator TAC1
TrEMBLM1DE901e-133M1DE90_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000876461e-134(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21362152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.19e-16C2H2 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]