PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400059446
Common NameLOC102595465
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 182aa    MW: 21137.8 Da    PI: 4.8309
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400059446genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF321.6e-1029542045
                          HHHHHHHHHHHHT-EEEEEEE-TTSE CS
                SRF-TF 20 ilKKAeELSvLCdaevaviifsstgk 45
                            KKA+ELS+LCda+  ++ifs++ +
  PGSC0003DMP400059446 29 FTKKAHELSTLCDAQLGIVIFSPSEE 54
                          56********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006610.091255IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.06E-112280IPR002100Transcription factor, MADS-box
PfamPF003193.6E-92754IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MSNKERLENN TESSGGNTNN LLYKKIACFT KKAHELSTLC DAQLGIVIFS PSEEILWPTE  60
NQAKERFENY LSFDWDTRKP NLETQESSLD KKMKAQEKNI RKMEQENEEK KMELLFNEVI  120
NGKSYLELDA RELKGMIKLI ALNKTKVDEC KKQLQEEDQP IKDNDNNIEE KNDSIPKNNY  180
V*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400059446
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357010.11e-129PREDICTED: MADS-box protein SOC1-like
TrEMBLM1DEI61e-127M1DEI6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000877711e-128(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27960.17e-06AGAMOUS-like 90
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]