PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400059476
Common NameLOC107061147
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 145aa    MW: 16598.3 Da    PI: 10.1746
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400059476genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF30.54.6e-10347246
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                           ie ++ r v+fskR+++++  A+   + +++ v v++fs++gk 
  PGSC0003DMP400059476  3 LIETERARMVSFSKRKKTLFQDANKFATQTGTYVGVMLFSPSGKS 47
                          69999**************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.302154IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-5153IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.76E-15176IPR002100Transcription factor, MADS-box
PfamPF003194.0E-14450IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MKLIETERAR MVSFSKRKKT LFQDANKFAT QTGTYVGVML FSPSGKSCSY GSTSIEEIID  60
KFLKVKQKDR KCDYAEGKSN GFEALEDLHK ELQALNEKEK KRILMHKIMH RGSEIPSDKH  120
MEEQKLALKL RVEKIKKEIQ SASI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400059476
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-152HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015165450.11e-101PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLM1DEK81e-100M1DEK8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000878011e-101(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17801260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.12e-12AGAMOUS-like 29
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]