PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400059577
Common NameLOC107061828
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Trihelix
Protein Properties Length: 254aa    MW: 28928.5 Da    PI: 9.1604
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400059577genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix699e-2240132184
              trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 
                           rWtk+e+l+Li++++ +++r+ r++         + +++W+ vs++++++ ++r+p+qC+++w+nl++++kkike+e++ ++e++s + 
  PGSC0003DMP400059577  40 RWTKHEILVLIQGKKLVQDRIHRARtggmelgstQVEAKWDFVSSYCKRQVVNRGPIQCQKRWSNLAGDFKKIKEWESQIKEEKESFWI 128
                           8**************99999998755566666669*********************************************999998887 PP

              trihelix  81 yfdq 84 
                           + ++
  PGSC0003DMP400059577 129 MRND 132
                           7765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.7E-1040127No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MASKSNNLKQ LILIPSTDSD DRQQSINGVN DANKVLRLPR WTKHEILVLI QGKKLVQDRI  60
HRARTGGMEL GSTQVEAKWD FVSSYCKRQV VNRGPIQCQK RWSNLAGDFK KIKEWESQIK  120
EEKESFWIMR NDFKREEKLP GFFDRQVFDI LDHGNGNEEG LDLASEREVL FDSGRSVVVG  180
DDGLFSNVPQ MNEDAIRMLT SEEQHQPLSQ VSPTEAGVRQ TTTRGADKGR GQEGRKRKRN  240
DSNDEKKGMS NII*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400059577
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2466360.0AC246636.4 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-44h3 map 1, complete sequence.
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015167211.10.0PREDICTED: trihelix transcription factor ASR3-like
SwissprotQ8VZ201e-62ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLM1DET40.0M1DET4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000879020.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17862460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.12e-65Trihelix family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]