PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400059843
Common NameLOC107060703
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 156aa    MW: 17221.4 Da    PI: 10.1575
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400059843genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.85.8e-131259249
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                          +i  k+ r v fskR+ g++ KAeEL  L+  +v  ++fs+++  ++y
  PGSC0003DMP400059843 12 KITKKTARMVAFSKRKRGLFRKAEELESLTSSRVTSVVFSPSDIPHTY 59
                          7899*************************************9988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.208363IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-11362IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.49E-16474IPR002100Transcription factor, MADS-box
CDDcd001201.27E-16460No hitNo description
PRINTSPR004043.1E-10525IPR002100Transcription factor, MADS-box
PfamPF003194.4E-171259IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-102540IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-104061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MGTGKKKIDI EKITKKTARM VAFSKRKRGL FRKAEELESL TSSRVTSVVF SPSDIPHTYG  60
DVNFVIKKHF SSCNRSVTST SVMNSHHSSY DVSGESSGSK SSSNSKGNGL RGWVEDIDVE  120
GCQNLNQLLM LKEQLEGTRK KIVSNDSESF QAFFM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400059843
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015164375.11e-110PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLM1DFD41e-109M1DFD4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000881681e-110(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23371757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G66656.11e-10AGAMOUS-like 91
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]