PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400060025
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 233aa    MW: 27108.6 Da    PI: 4.8179
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400060025genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM56.96.9e-1851123109
                   NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                           +G+rFhPtd el+ +yLk+  +g+    +++ i+ vdiy    Pw++   +++eek  yf ++ +k++ ++kr  r+ ++g+Wk +  +
  PGSC0003DMP400060025   5 MGIRFHPTDTELI-NYLKRFFKGELSLNQQCpIQFVDIYGDqSPWEIF-GANSEEKFRYFITPLKKRKIKDKRFCRTCAKGTWKGQTGE 91 
                           7************.9*******9985444556*******7548****6.666777788**************************55555 PP

                   NAM  90 kevlsk.kgelvglkktLvfy 109
                             ++++  g +vg kk + f 
  PGSC0003DMP400060025  92 DLIKRNhMGLVVGFKKNFKFE 112
                           55555437788*******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100515.5633176IPR003441NAC domain
SuperFamilySSF1019411.57E-155122IPR003441NAC domain
PfamPF023657.0E-125137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MSKQMGIRFH PTDTELINYL KRFFKGELSL NQQCPIQFVD IYGDQSPWEI FGANSEEKFR  60
YFITPLKKRK IKDKRFCRTC AKGTWKGQTG EDLIKRNHMG LVVGFKKNFK FETNFVVCRI  120
KKKITMDKEK NVDHVMDEED GDVAGVIDPM LLLEPNHNND YSTTEDEVRV CEATTSEYDV  180
STMEKKETTL EVEEGHGVDD IRSEEDMYRT FEDIPVDIPD DWLQHSSVLQ DI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400060025
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2469311e-145AC246931.1 Solanum lycopersicum chromosome 3 clone EcoRI0087D24, complete sequence.
GenBankAC2469971e-145AC246997.1 Solanum lycopersicum chromosome 3 clone EcoRI0087D24, complete sequence.
GenBankHG9755151e-145HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006366896.11e-148PREDICTED: NAC domain-containing protein 2-like
TrEMBLM1DFS41e-172M1DFS4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000883501e-173(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8141386
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.14e-10NAC domain containing protein 35
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]