PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400060033
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 217aa    MW: 24699 Da    PI: 4.4191
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400060033genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like60.24.1e-1958105452
               G2-like   4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 
                           ++Wt++LH+rF+++v+qL G+ +  Pk+i+e+m+++gLt+ +v+SHLQ 
  PGSC0003DMP400060033  58 REWTEDLHARFMQVVHQL-GEGRCFPKEIVEVMSLPGLTRMQVASHLQE 105
                           78****************.9****************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.17E-1453107IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.6E-1854105IPR009057Homeodomain-like
TIGRFAMsTIGR015575.0E-1756106IPR006447Myb domain, plants
PfamPF002499.5E-659104IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MSYTKEQSNN IHEAENDVEL SEIYMLQRKR DTKGMKKNNE GERQNNVIDK VVTRKEYREW  60
TEDLHARFMQ VVHQLGEGRC FPKEIVEVMS LPGLTRMQVA SHLQETNTNA NSQQYVGEPI  120
MSGPRNIVVA SHENYVVGSN YNEKENSDAY LNFNNMDYLF QNLGPSGANL PNEQGNEFDQ  180
VYSDNQNLGP PSANLPNEHD SEFDQVYSDD QVSASI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400060033
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754482e-31HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015165596.17e-51PREDICTED: putative two-component response regulator ARR13
TrEMBLM1DFT11e-159M1DFT1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000883581e-160(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8132384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.22e-12response regulator 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]