PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400060084

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

bZIP

Protein Properties

Length: 142aa MW: 15829.5 Da PI: 4.8106

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400060084	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	27.6	6.5e-09	89	120	3	34
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeek 34 + kr r+++NRe ++ +RqRKk ++eeL+ k PGSC0003DMP400060084 89 DEKRKLRRMRNRENSQIYRQRKKNYVEELRGK 120 569**************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.7E-6	81	120	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MENSLPPSPD DLNLDLDIDL TRDGIFPPAD ADAATILNPK SLNVSKPSQI DPNPNGFGQS 60 GSQLIETRVF KSSPESVQTQ MDSVNSEGDE KRKLRRMRNR ENSQIYRQRK KNYVEELRGK 120 GEDNGFNIPT FNIGECGFFP K*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400060084

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	2e-42	HG975447.1 Solanum pennellii chromosome ch08, complete genome.
GenBank	HG975520	2e-42	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015159146.1	1e-53	PREDICTED: bZIP transcription factor 17-like isoform X1
TrEMBL	M1DFW9	1e-97	M1DFW9_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400088409	2e-98	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40950.1	9e-10	bZIP family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400060084

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474]