PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400060286
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 166aa    MW: 18836.9 Da    PI: 4.3579
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400060286genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF405e-13350249
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                          +ien+  r++tfskRr ++ KKA+EL    d++v + +fs+t+k y +
  PGSC0003DMP400060286  3 KIENEDARYTTFSKRRSTLYKKASELVGKYDVDVGITLFSPTDKPYSF 50
                          59****************************************998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001202.03E-17153No hitNo description
PROSITE profilePS5006615.432154IPR002100Transcription factor, MADS-box
SMARTSM004323.4E-8153IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.19E-17267IPR002100Transcription factor, MADS-box
PfamPF003199.8E-19350IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MVKIENEDAR YTTFSKRRST LYKKASELVG KYDVDVGITL FSPTDKPYSF FHPTLDVVVD  60
RFFSPNTQPS ESNRIAIENS RNKGRELKAE LDGLDIIERG LSNPTSGTEE TDMKKMWESI  120
MEFNEEEVNE LELWLKSVDF DLKNSLSQVE NNASSSTQAP PENVD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400060286
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755151e-163HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006365607.11e-118PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLM1DGC11e-117M1DGC1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000886111e-117(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-19AGAMOUS-like 61
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]