PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400060329
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 328aa    MW: 37453.3 Da    PI: 8.6029
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400060329genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.72.6e-171059250
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T.TSEEEEEE CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss.tgklyeys 50
                          +ie++s+r++++ kR++g+lKK  EL +LCd+eva +i+++ +++ y+++
  PGSC0003DMP400060329 10 FIEDDSKRKISYNKRLKGLLKKSDELKTLCDVEVATVIYGPyRNEPYTFP 59
                          8***************************************8578888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.6E-12161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.255149IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-20296IPR002100Transcription factor, MADS-box
CDDcd002669.03E-21284No hitNo description
PRINTSPR004041.0E-7323IPR002100Transcription factor, MADS-box
PfamPF003193.7E-181058IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-72338IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-73859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MTRNKVNYAF IEDDSKRKIS YNKRLKGLLK KSDELKTLCD VEVATVIYGP YRNEPYTFPN  60
NDVVRNTFIK FKELPTLDRS KNMVTREEFT MQRIKKLEEQ LQKVRKENRV KEMTNEMYEV  120
FERKIVSVDM NPSYLNDLRC VIKKNLKQVR ELMIKEANGE GSTSNAPQPI VEPMVHSRNN  180
SEGPLNPSPQ LFSQMFPPMV PQLFSPMPQH MAIGKTPGLT HPMPSTIMDS LMPAPMIDSP  240
MSSLMMVPPM YSPVSPTMNQ QIELSMDIPS IGISTSMNNN QNSSVDLPDS PTISGFLNWK  300
DDVVMTLLDD PFLKNINVQD PNHTKKF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11525KRKISYNKRLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400060329
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015167329.10.0PREDICTED: MADS-box transcription factor PHERES 2-like
TrEMBLM1DGF80.0M1DGF8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000886540.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13291040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65330.13e-30M-type_MADS family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]