PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400060373
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 215aa    MW: 23796.7 Da    PI: 5.1357
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400060373genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY47.34.3e-15811212059
                           S-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY  20 fprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            +r+YY+C+++  C+++kk+e+s +d++++ + Y+geHnh+
  PGSC0003DMP400060373  81 RTRNYYKCSTSkLCEARKKIEKSPNDENIFLVSYSGEHNHD 121
                           58******99879***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007744.0E-771122IPR003657WRKY domain
PfamPF031062.9E-1181121IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-1381123IPR003657WRKY domain
SuperFamilySSF1182907.98E-1181123IPR003657WRKY domain
PROSITE profilePS5081117.12183123IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MGDDDWDVGA AVRSCNINRP DNVVAPKLDL ETSLNDVWNS FDKLFAPDIT NFNDLSEIFS  60
LDFPAAHQEK PDDQTPLIQT RTRNYYKCST SKLCEARKKI EKSPNDENIF LVSYSGEHNH  120
DPPTNHRNLA SCNSSSKFKL PKGINILPKT STLNASSTSS KRIKCSRDVA SPIIATMPPL  180
EFGNKNKMIV AAVEDKGDGK EEVGMNEDIL MGFE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400060373
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019069556.24e-78probable WRKY transcription factor 27
TrEMBLM1DGI51e-157M1DGI5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000886981e-158(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36681345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.11e-14WRKY DNA-binding protein 27
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]