PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400060470
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 212aa    MW: 23843.9 Da    PI: 5.8117
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400060470genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.98.9e-1754103255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            y+GVr++    +Wv+eIr+p   +k++r++lg+f t+e Aa+a++ a+++l+g
  PGSC0003DMP400060470  54 LYRGVRRRN-GEKWVCEIREP---NKKTRIWLGTFSTPEIAARAHDVAALALRG 103
                           69****877.9*********9...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-1153103IPR001471AP2/ERF domain
CDDcd000183.93E-3053111No hitNo description
SuperFamilySSF541711.24E-2054112IPR016177DNA-binding domain
PROSITE profilePS5103222.07654111IPR001471AP2/ERF domain
SMARTSM003804.0E-3054117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-3054112IPR001471AP2/ERF domain
PRINTSPR003671.2E-75566IPR001471AP2/ERF domain
PRINTSPR003671.2E-77793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MDFEDALTSS SSSSSDHDNK EKNIDLSSCS TNNNNVQFKR RAGRKKFKET RHPLYRGVRR  60
RNGEKWVCEI REPNKKTRIW LGTFSTPEIA ARAHDVAALA LRGSNALLNF PGSAWSLPKA  120
KSSSPQDIQI AVLQVNKELV VSSSPLEEPS CKPKDDEVNS LMEFMDEEAM FNMPIFIDSM  180
AEGMLLTPPA MKRGFNWGDV EEDVEFTLWK D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-15521111272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400060470
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015088018.21e-134dehydration-responsive element-binding protein 1F-like
TrEMBLM1DGQ81e-155M1DGQ8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000887951e-156(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26324183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.17e-45C-repeat-binding factor 4
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]