PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400060643
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 111aa    MW: 12848.9 Da    PI: 9.1401
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400060643genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.96.1e-14250149
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                          k+ien+     tf++Rr+g+ KKA EL + C++++ ++++s+t k + +
  PGSC0003DMP400060643  2 KKIENEDAMFATFTNRREGLYKKARELATECNIDIRIMMVSPTSKPHSF 50
                          6899**************************************9987766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.035154IPR002100Transcription factor, MADS-box
SMARTSM004323.6E-8153IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-16166IPR002100Transcription factor, MADS-box
PfamPF003191.3E-16350IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MKKIENEDAM FATFTNRREG LYKKARELAT ECNIDIRIMM VSPTSKPHSF LHPIDNAVIF  60
RFQNLDMQLS ESTNLEVNAT RNKVNQLKNR LEELDVIEYI TIAKKTLMTK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400060643
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015166885.12e-54PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLM1DH555e-75M1DH55_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000889688e-76(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G66656.12e-14AGAMOUS-like 91
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]