PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400060680
Common NameLOC102592766
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 213aa    MW: 24095.8 Da    PI: 6.501
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400060680genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.39.6e-075175226
                          -S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                          ++e+C  f r GtC+yG++C+  H+
  PGSC0003DMP400060680 51 RQEICGQFKRWGTCPYGEKCCHLHS 75
                          689******************9997 PP
2zf-CCCH21.54e-07109134227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           kt+ C  + r  tC yG++CkFaHg+
  PGSC0003DMP400060680 109 KTKFCYQWERKNTCFYGANCKFAHGE 134
                           5666********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902299.73E-74979IPR000571Zinc finger, CCCH-type
SMARTSM003560.0234976IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.3995077IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-45175IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-75378IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-9105138IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-12106139IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.117107135IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4107134IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-5109134IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MSRRDNDLEI SGKRNEYSAN AECESLKKPM EENSRMAQEG NIPIVPTIHD RQEICGQFKR  60
WGTCPYGEKC CHLHSRDEGE PRESSATIIV NDSQGIGQPK MPVDCTKLKT KFCYQWERKN  120
TCFYGANCKF AHGEAEMRSL DSSNPPESWS SVDISSLTRN VPATNVESNE IRTIAQAKCR  180
SKLNDIKRNS RIYADWIESL QPSPESPDTK EN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400060680
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU1247421e-159EU124742.1 Solanum lycopersicum chromosome 3 clone C03HBa0323D22, complete sequence.
GenBankHG9754421e-159HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBankHG9755151e-159HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006364194.21e-158PREDICTED: zinc finger CCCH domain-containing protein 39-like
TrEMBLM1DH831e-157M1DH83_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000890051e-158(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA130261320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-12C3H family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]