PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400060721
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 85aa    MW: 9844.85 Da    PI: 10.872
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400060721genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.31.5e-16858151
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          k+ie+ ++rqv fskRr  +lKKA E+ + Cd++ + + fs+  +l  ++s
  PGSC0003DMP400060721  8 KKIEEMTKRQVIFSKRRSSLLKKAAEIAICCDVDMLFVAFSPAARLGKFCS 58
                          68*******************************************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.3E-16159IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.89160IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-15222IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.06E-20377IPR002100Transcription factor, MADS-box
PfamPF003192.4E-16954IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-152237IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-153758IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MGRKIEMKKI EEMTKRQVIF SKRRSSLLKK AAEIAICCDV DMLFVAFSPA ARLGKFCSKK  60
RIEDILQRYV KFPIERRLTS INFS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400060721
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015159179.12e-43PREDICTED: agamous-like MADS-box protein AGL104
TrEMBLM1DHB59e-53M1DHB5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000890462e-53(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37851219
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.12e-20AGAMOUS-like 104
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]