PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400060834
Common NameLOC107058123
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 165aa    MW: 18847.6 Da    PI: 6.6864
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400060834genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.93.9e-11246145
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                          k ie+++ r+v+fskR+++++  A+   + ++a+v v++fs+ gk
  PGSC0003DMP400060834  2 KIIESERARTVSFSKRKKTLFEDAKKFATQTGADVGVMLFSPGGK 46
                          579***************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.708154IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-16179IPR002100Transcription factor, MADS-box
SMARTSM004323.0E-7153IPR002100Transcription factor, MADS-box
PfamPF003191.9E-15450IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MKIIESERAR TVSFSKRKKT LFEDAKKFAT QTGADVGVML FSPGGKPCSY GSTSIEEIIE  60
NFLKVKLEDR QRDYVEGQSN GFEALEDLHK ELQTCNEKEK KRVLMHKILH PGSEIPRDKH  120
MEDQKLAMKL RVEKIKKETQ NSILVEHLKF DLNVAPEPEG EEES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400060834
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
GenBankHQ8963100.0HQ896310.1 Solanum tuberosum clone RH201H22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015158947.11e-117PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLM1DHK11e-116M1DHK1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000891591e-117(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17801260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.14e-15AGAMOUS-like 29
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]