PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400060971
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 172aa    MW: 19828.3 Da    PI: 4.8633
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400060971genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM49.81.1e-1599541128
                   NAM  41 kvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                           + ePw++ +   +++   yf ++++kk+++ kr  r++ +g+Wk +gk kev+++kg+l+g  k L +  g +++k ++ +W+m ey+l
  PGSC0003DMP400060971   9 ENEPWQIFEG--TNNYTHYFITPQKKKNSKWKRVARTVGNGTWKPQGKGKEVFDNKGRLMGYMKKLKYTYGkSDNKNVNGEWLMTEYSL 95 
                           469****622..2334668889999999999*************************************8663677889*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.0351118IPR003441NAC domain
SuperFamilySSF1019411.96E-2010118IPR003441NAC domain
PfamPF023653.7E-71195IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MEVVNLYAEN EPWQIFEGTN NYTHYFITPQ KKKNSKWKRV ARTVGNGTWK PQGKGKEVFD  60
NKGRLMGYMK KLKYTYGKSD NKNVNGEWLM TEYSLYDGYL GAREIKNRGY VICKIKKKGK  120
STIDENMNDV EELIDSSLQL EDDIVVEEDD VGDEVLAIMD KEDDGDRNVE C*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400060971
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006348977.11e-122PREDICTED: NAC domain-containing protein 68-like
TrEMBLM1DHV81e-121M1DHV8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000892961e-122(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10241385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01540.13e-12NAC with transmembrane motif1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]