PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400061053
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 341aa    MW: 38709 Da    PI: 8.5524
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400061053genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.42.7e-11248295155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           ++ykGVr++k    Wv+e+++p+   +r r++lg f+  eeAa  +++a  +++g
  PGSC0003DMP400061053 248 KKYKGVRQRK----WVSEVQVPK---MRNRIWLGMFDMSEEAALTYDKAVIEMRG 295
                           59****9665....*******83...349************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR003674.1E-5179190IPR001471AP2/ERF domain
CDDcd000183.73E-21248301No hitNo description
SuperFamilySSF541718.5E-12249302IPR016177DNA-binding domain
PfamPF008478.5E-7249295IPR001471AP2/ERF domain
PROSITE profilePS5103214.486249303IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-19249301IPR001471AP2/ERF domain
SMARTSM003801.2E-19249309IPR001471AP2/ERF domain
PRINTSPR003674.1E-5269285IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MRGPDAVTNI LKPPPREVQP MENNLINPPP KEINFMNLSS SSSNDARIVW ITDSSNEPTT  60
YCDGLDLDLY ASSVPDCWMF VARISRKEGY QKTLKNDATK KSTVQVEGSS SVQPNPAGVY  120
LWGVNLMNVS NEDKEKVKEE KSKGRGKTRQ KKIITENENV EAISIENSKE KPQENVEKYK  180
GVRQRKWGCD LMNPSNEEKG KVKEEKSEQD EMTCEKEMIV KNNIENTDEI SIENSKGKQI  240
KLPQKNVKKY KGVRQRKWVS EVQVPKMRNR IWLGMFDMSE EAALTYDKAV IEMRGPDAVT  300
NILKPPPREV QPMENNLINP LPKEINFMNL SSSSSNDARV *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400061053
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015158623.11e-46PREDICTED: ethylene-responsive transcription factor CRF4-like
TrEMBLM1DI150.0M1DI15_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000893780.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-19cytokinin response factor 4
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]