PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400061116
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 158aa    MW: 17405.4 Da    PI: 4.4777
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400061116genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.000321435223
                          EETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                          +Cp+C++  ++++++++H ++H
  PGSC0003DMP400061116 14 QCPICNEIGRTNDEFMSHFQSH 35
                          8*****************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MFLQALSSHP TLLQCPICNE IGRTNDEFMS HFQSHPMRQQ VIHLAQGFST LGITSTLVLP  60
PERLERSTRA ERVMPQTTPP PPLPSSPPPP PPQRSYPIRG NNDGESVNAG SIGIDLNEIP  120
SESTRSQDVP IQNTFSEPQL TNTDDETNDE LDLNLRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400061116
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754516e-89HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM1DI621e-108M1DI62_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000894411e-109(Solanum tuberosum)
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]