PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400061279
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 250aa    MW: 28661.5 Da    PI: 9.0555
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400061279genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY711.7e-2286144259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           +D+++WrK GqK++k s+fpr+Y++ +++  C++kk +e+s ++++++ + Y+geHnh+
  PGSC0003DMP400061279  86 NDKWAWRKCGQKSIKASPFPRNYFKFSTSrFCEAKKIIEKSPKNENYLLVSYSGEHNHD 144
                           8************************988769***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-2175146IPR003657WRKY domain
SuperFamilySSF1182904.05E-1879146IPR003657WRKY domain
PROSITE profilePS5081123.45680146IPR003657WRKY domain
SMARTSM007743.5E-1985145IPR003657WRKY domain
PfamPF031065.5E-1886144IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MYLHPIQPTE FGQQLFLPPS PTTTSCVATT TTTSQKSIDL RQQFVMQDQV YPNFTMPMKI  60
PLIETCKRKN QSTRVIYEVL QEEFINDKWA WRKCGQKSIK ASPFPRNYFK FSTSRFCEAK  120
KIIEKSPKNE NYLLVSYSGE HNHDPPTYRR SLALYSNSSK NKLPKSINIV PKALNLNASS  180
ASSKRAKRLK VDASSISRTA ATLEIERNNK TIDVVTENKD DGEEEENAYD NFFMGFEEFQ  240
EVTASILWE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-13831461274WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400061279
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015158586.10.0PREDICTED: probable WRKY transcription factor 27
TrEMBLM1DIH80.0M1DIH8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000896040.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36681345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.16e-28WRKY DNA-binding protein 27
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]