PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400061462
Common NameLOC102593408
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 175aa    MW: 20452.6 Da    PI: 9.9042
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400061462genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.57.1e-181059250
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T.TSEEEEEE CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss.tgklyeys 50
                          +ie++s+r++++ kR+ng+lKK  EL +LCd+eva +i+++ +++ y+++
  PGSC0003DMP400061462 10 FIEDDSKRKISYNKRLNGLLKKSDELKTLCDVEVATVIYGTyRNEPYTFP 59
                          8**********************************999997478889987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.731150IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-11161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.23E-20296IPR002100Transcription factor, MADS-box
CDDcd002662.57E-17284No hitNo description
PRINTSPR004043.8E-9323IPR002100Transcription factor, MADS-box
PfamPF003193.0E-181058IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-93859IPR002100Transcription factor, MADS-box
Gene3DG3DSA:1.20.1250.106.4E-485161IPR012351Four-helical cytokine, core
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MTRNKVNYAF IEDDSKRKIS YNKRLNGLLK KSDELKTLCD VEVATVIYGT YRNEPYTFPN  60
NDVVRNAFIK FKELPTLDRS KNMVTREEFT MQRIKKLEEQ LQKVRKENRV KEMTNEMYEV  120
FKGKTVSVDM NPSYLNDLRC VIKKNLKQVR ELMIKEANGE GSTSNAPQPI VEQL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400061462
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006360673.11e-124PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLM1DIX41e-123M1DIX4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000897871e-124(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13291040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65300.11e-30AGAMOUS-like 38
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]