PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400061582
Common NameLOC102595870
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 262aa    MW: 30811.9 Da    PI: 5.157
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400061582genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM68.91.4e-2151293128
                   NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk.atgk 88 
                           +G+rFhPtd el+ +yLk+  +g+    +++ i+ +diy    Pw++   +++eek  yf ++ +k++ ++kr  r+ ++g+Wk +tg+
  PGSC0003DMP400061582   5 MGIRFHPTDTELI-NYLKRFFKGELSLNQQCpIQFADIYGDqPPWEIF-GANSEEKFRYFITPLKKRKIKDKRFCRTCAKGTWKgQTGE 91 
                           7************.9*******9985444556*******87368***5.666777788**************************66666 PP

                   NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           d    ++ g +vg k+ + f   +++ g++ +W+m eyr+
  PGSC0003DMP400061582  92 DLIRRNRMGLVVGFKRNFKFE--TSECGQNKTWLMIEYRV 129
                           65555558889*********8..788999*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100527.0323153IPR003441NAC domain
PfamPF023652.9E-155129IPR003441NAC domain
SuperFamilySSF1019411.14E-225153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MSKQMGIRFH PTDTELINYL KRFFKGELSL NQQCPIQFAD IYGDQPPWEI FGANSEEKFR  60
YFITPLKKRK IKDKRFCRTC AKGTWKGQTG EDLIRRNRMG LVVGFKRNFK FETSECGQNK  120
TWLMIEYRVA DSFFKENNHI VKEDFVVCRI KKKLSMDKEK NVDHVMDAED GDVAEVIDPM  180
LLLEPNDNND YSTTEDQVRV CEATTSEYDV QNSSTMEKRR TTLEVQEGHR VDDIRSEEDM  240
YRTFEDILVD IPDDWLQHSL I*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400061582
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006366896.10.0PREDICTED: NAC domain-containing protein 2-like
TrEMBLM1DJ650.0M1DJ65_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000899070.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8141386
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.15e-17NAC domain containing protein 52
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]